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Showing posts with the label Snakemake
Use Of Argparse In Snakemake Script

Use Of Argparse In Snakemake Script

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Is it possible to pass custom command line arguments to snakemake scripts? I have tried, but execut… Read more Use Of Argparse In Snakemake Script
How To Make Snakemake Input Optional But Not Empty?

How To Make Snakemake Input Optional But Not Empty?

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I'm building an SQL script out of text data. The (part of) script shall consist of a CREATE TAB… Read more How To Make Snakemake Input Optional But Not Empty?
Snakemake - Dynamically Derive The Targets From Input Files

Snakemake - Dynamically Derive The Targets From Input Files

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I have a large number of input files organized like this: data/ ├── set1/ │ ├── file1_R1.fq.gz │ … Read more Snakemake - Dynamically Derive The Targets From Input Files