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Showing posts with the label H5py

Python: Can I Write To A File Without Loading Its Contents In Ram?

Got a big data-set that I want to shuffle. The entire set won't fit into RAM so it would be goo… Read more Python: Can I Write To A File Without Loading Its Contents In Ram?

How Should I Use The H5py Library For Storing Time Series Data?

I have some time series data that i previously stored as hdf5 files using pytables. I recently trie… Read more How Should I Use The H5py Library For Storing Time Series Data?

Opening A Mat File Using H5py And Convert Data Into A Numpy Matrix

I have a mat file which contains 2 different cells containing matrices of different size. I need to… Read more Opening A Mat File Using H5py And Convert Data Into A Numpy Matrix

Getting Multiple Datasets From Group In Hdf5

I am comparing two different hdf5 files to make sure that they match. I want to create a list with … Read more Getting Multiple Datasets From Group In Hdf5

H5py Writing A Hdf File , Question About Dimension

I created a new file whose handle is fw. fw.create_dataset('grp1/grp2/grp2/varname',data=ar… Read more H5py Writing A Hdf File , Question About Dimension

Python: Issue Reading In Str From Matlab .mat File Using H5py And Numpy

I am having difficulty loading in 'str' variables 'Et' (Endtime) and 'St' (… Read more Python: Issue Reading In Str From Matlab .mat File Using H5py And Numpy

Creating Reference To Hdf Dataset In H5py Using Astype

From the h5py docs, I see that I can cast a HDF dataset as another type using astype method for the… Read more Creating Reference To Hdf Dataset In H5py Using Astype

How To Compress The Data That Saved In Hdf5?

I am using python 2.7 to read a video and store in hdf5. This is my code import h5py import skvideo… Read more How To Compress The Data That Saved In Hdf5?

Fast And Efficient Way Of Serializing And Retrieving A Large Number Of Numpy Arrays From Hdf5 File

I have a huge list of numpy arrays, specifically 113287, where each array is of shape 36 x 2048. In… Read more Fast And Efficient Way Of Serializing And Retrieving A Large Number Of Numpy Arrays From Hdf5 File

In H5py, What Is Type "|o"?

Debugging a program working with h5py. The hdf5 should look something like this: test.hdf5 -lab… Read more In H5py, What Is Type "|o"?

Attributeerror: 'int' Object Has No Attribute 'encode' Hdf5

I'm trying to open a HDF5 file in Python using the following code: with h5py.File('example.… Read more Attributeerror: 'int' Object Has No Attribute 'encode' Hdf5

How Can I Solve This 3d Regular Grid Interpolation Problem

I am a new python user. I have a h5 file, which is a snapshot of gravitational potential at a fixed… Read more How Can I Solve This 3d Regular Grid Interpolation Problem

Fast And Efficient Way Of Serializing And Retrieving A Large Number Of Numpy Arrays From HDF5 File

I have a huge list of numpy arrays, specifically 113287, where each array is of shape 36 x 2048. In… Read more Fast And Efficient Way Of Serializing And Retrieving A Large Number Of Numpy Arrays From HDF5 File

Opening A Mat File Using H5py And Convert Data Into A Numpy Matrix

I have a mat file which contains 2 different cells containing matrices of different size. I need to… Read more Opening A Mat File Using H5py And Convert Data Into A Numpy Matrix