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I have a clear idea of what I would like to plot, but I am not sure where to start using matplotlib… Read more Trouble With Stacked Bar Graph Without Pooling

I need to extract Gleason scores from a flat file of prostatectomy final diagnostic write-ups. Thes… Read more Pyparsing: Extract Variable Length, Variable Content, Variable Whitespace Substring

I am working on a python project where I study RNA structure evolution (represented as a string for… Read more Can I Use K-means Algorithm On A String?

I am on Ubuntu 20.04.1 LTS focal, and using R. I want to install in R a library to perform local se… Read more Why R Library 'ssw' Cannot Find Python Module Installed Via Pip3, Although Pip3 Module Installation Is Satisfied?

I have two lists of genes that i'm analyzing. Essentially I want to sort the elements of these … Read more Getting Intersection Of Two Lists In Python

I wrote a piece of code that is supposed to find common intersecting ID's in line[1] in two dif… Read more Finding Common Id's (intersection) In Two Dictionaries

I am trying to find corresponding keys in two different dictionaries. Each has about 600k entries.… Read more Finding Matching Keys In Two Large Dictionaries And Doing It Fast

I'm working on a script that currently contains multiple lists of DNA sequences (each list has … Read more Algorithm To To Cluster Similar Strings In Python?

I have a large number of input files organized like this: data/ ├── set1/ │ ├── file1_R1.fq.gz │ … Read more Snakemake - Dynamically Derive The Targets From Input Files

I am using the following regex: orfre = '^(?:...)*?((ATG)(...){%d,}?(?=(TAG|TAA|TGA)))' % (… Read more Using Regex To Search Until Desired Pattern

So I have a csv file where each line represents hierarchical data in the form: 'Phylum',… Read more Convert Csv To Newick Tree